I am somewhat behind on writing up blogs, partially because I can't keep up with myself and partially because I want to get a good overview of my new home, Roswell, New Mexico and the Chihuahuan desert, before focusing on the sections that I'm exploring on monthly hikes. Also, I'm finding photography to be so intensive in my explorations of biology that I'm branched into a deeper study of photography. Following, I plan to refresh my knowledge of electronics and, specifically microcontrollers and data loggers. So I've rebuilt my prototyping set.
Tuesday, July 28, 2026
A few things
Homeostasis
My hikes, especially the grueling ones, double as medical monitoring. I regularly tell my doctor that I've just completed my stress test....An endurance hike, if I can survive that, my heart must be in pretty good shape!
In my experience, if my general health is good, incidental and focal illnesses are not as intense and resolve quicker.
Living things maintain homeostasis We are assemblages of tiny bags of chemicals. Try throwing a bunch of chemicals in a bag and see how long the reactions last. Living thing evolved to maintain the chemical reactions we call life for a lifetime.
So, I put cold and warm tap water, and water from our tea kettle into plastic cups and dropped in Efferdent effervescent tablets. And I videoed the process. Guess the temperature sequence!
The cup on the left has the hot water and the one on the right has the cool water. The rate of the reaction is determined by the temperature. The last thing a living creature needs is to be dependent on temperature
I wanted to know how well my body maintained its internal temperature so I taped a temperature and humidity sensor (Cloudcom A1 by ACInfinity) to my chest (the upper right circle below). The transmitter is in the lower left circle just above the bottom circle around my smartphone.
As shown in the legend, the blue dots trace my body temperature (a little affected by the air temperature since the side of the sensor not against me was against tape, a t-shirt, and the outside world) and the red dots trace the humidity inside my T-shirt (mostly determined by my sweat.)
Homeostasis has to work at all levels for life to happen.
For instance, for the chemical processes that make up life, the human body needs to maintain a pH range between 7.35 and 7.45. There are several buffer systems in the blood to achieve that but the primary one is the bicarbonate-carbonic acid system. The carbon dioxide formed as a waste product of metabolism in the body is carried to the lungs dissolved in blood to be removed into the air. Carbon dioxide dissolved in water is carbonic acid. Along with the sodium ions, sodium bicarbonate is also present. It just so happens that the carbonic acid (an acid that can neutralize bases) and sodium bicarbonate (a base that can neutralize acids) form a chemical system that maintains it's environment between a pH of 7.35 and 7.45.
You can actually throw this buffer system off by breathing fast and hard (hyperventilating) and loading the blood stream with too much carbon dioxide. That causes respiratory acidosis, a condition that can cause severe side effects
On the cellular level, there are proteins in cell walls that can move glucose into and out of cells but you need to have a certain amount in the cell to fuel the cell. Once the sugar is in, you don't want it to escape, so the first thing a cell does when processing sugar is to attach a phosphate group so that it can't leave
On the organism level, both hormones and autonomic nerves play a part in homeostasis and not just with negative feedback loops. Positive feedback is also used
One of the "feel good" hormones, oxytocin, plays a big part in childbirth. When the child's head presses up against the mother's cervix, it stimulates the production of oxytocin by the brain which, in turn, causes uterine contractions. That causes more pressure on the cervix until the baby is born and the process is shut down.
The process of blood clotting in a wound is also a positive feedback loop with the clotting factors increasing until bleeding stops.
Feedback loops operate to maintain balance on the ecosystem and even the global levels.
Predator-prey populations are classic. If there are too many predators, they eat too many prey. Then there's not enough food and some of the predators die until balance is restored. If there are too few predators, the prey overpopulate and reduce their food resources, which reduces the prey population and valance us restored.
Two major studies are the Isle Royale wolf-moose study
Wolves and Moose on Isle Royale
And the Yellowstone River wolf reintroduction study.
History of Wolves in Yellowstone
Do plants demonstrate homeostasis? Certainly.
An interesting demonstration tracks the state of stomata (leaf pores) in plant leaves.
Plants take in one of their primary nutrients, carbon dioxide, through these pores. They use carbon dioxide to build sugar via photosynthesis. Then they use the sugar the same way we do, as fuel. The process also needs water, which most plants take up through their roots. But evaporation of water through stomata produces a negative pressure that draws water up into the plant.
Stomata open and close to take up or conserve gases (carbon dioxide or waste oxygen) or water vapor (and keep in mind the cycle in which plants "breathe" in carbon dioxide and ",breathe" out oxygen while animals breathe in oxygen and breathe out carbon dioxide...... it's important).
You can observe stomata by taking a cast of a leaf using clear nail polish You need the nail polish, clear tape, and a microscope slide.
Lightly paint a strip of polish over the leaf. There is usually more stomata on the underside of leaves. Give if 15 minutes to dry. I used Sally Hansen's Diamond and waited 30 minutes once. The cast came out perfectly. Stick a piece of clear tape over the polish. When you peel the tape off, the polish will come with it. Stick the tape to the microscope slide.
Keep in mind that you aren't looking at the leaf. You're examining an impression of the leaf surface. The reason for looking at the cast is that you can't see through the leaf with a light microscope
Here are my subjects.
Tuesday, June 23, 2026
Photography -2
Professor Levoy goes very in depth into camera optics here:
and I have posted explorations in optics in the Observing and Recording LabBook:
I will skip all that and start exploring the particular camera apps that I use.
My Moto g Power shipped with the standard Motorola Camera (version 10.0.47.40). At face, it's a point-and-shoot (everything is automatic mode) camera, unless.....unless you choose the Pro mode, in which case you suddenly have all the adjustments.....aperture, ISO, mid focus, white balance and contrast. In other words, Pro mode is manual mode for the Moto Camera
The mode select bar is at the bottom just above the shutter release. There are a very satisfying number of modes to choose from.
One of its big strengths is an easy to get to slow motion video mode. It uses the primary camera only and there are not many controls available, but there doesn't really need to be.
You can select 1x or 2x. And it gives you a bar that lets you decide what section of the video will be slow. Here's that fan again.
It's simple and easy.
The birds here have learned a lot of tricks for dealing with the high winds. Here's a sparrow demonstrating some aerobatics. I heightened the contrast and darkened the scene to bring out it's image.
The video mode provides more control (but not slow motion) and has some unexpected tricks. For instance, it's an easy way to stop motion since you can use your editor to excise a still frame out of a video. Like this lightning strike.
You can select the flash and the microphone for sound. Moto Camera has FHD (Full High Definition), and unlike slow motion, you can use any of the three cameras.
The last item on the Mode bar (just above the shutter release) is "More". If you poke that, you'll see some special effect modes including two for video: Time Lapse and Dual Capture.
Time lapse is the opposite of slow motion. It speeds up the action. If you want to take a video of a flower opening, you can put the camera on a tripod, focus on the bud, and set the camera for Time Lapse.
In Time Lapse mode, there is a button to the right of the camera selector (above the shutter release, that opens a slider that will let you change the speed of the action.
Dual Capture will make a video with both the front and back cameras at the same time.
The Photo mode in the Moto Camera is basically the automatic mode discussed in Photography - 1, and, honestly, it does a great job of automatically adjusting exposure, field of view, and such which is why just about all the photographs in this blog have been taken in Photo mode.
It allows you to select which camera is used, whether to use the flash, photo aspect ratio, a time delay for the shutter, and a filter for the resulting photograph. In the settings, you can also include a time, date, location, camera, or Motorola logo stamp to include in the lower margin of the photograph.
The Portrait mode is completely automatic (you can select the flash) except that you can open a slider to adjust the depth of focus. In the following series, note that the yucca blossoms are clear at different distances from the camera
On the Moto Camera, the manual mode is called Pro. Opening the Pro mode gives you a bar over the shutter release that lets you adjust the manual focus, white balance (tone temperature,), aperture, ISO, and contrast, and it also shows a histogram.
The histogram is a guide for tones in the photograph. The horizontal axis is brightness of pixels. The vertical axis is the number of pixels at a specific tone level. A dark photograph will show a histogram with most of the values to the left.
Night vision mode uses an algorithm to take a quick sequence of photographs of the same scene with the same exposure. Then it aligns them and cleans up the results. I was quite surprised at how well it does in low light surroundings. It's not infrared. It does require some light to make images.
Also, contrast is important. Too much light in one area of a photograph will blot out details in another. I wanted to emphasize the soap tree yuccas against the dusk in the bottom photo. The top photo was a darker scene, so more ground details are visible
With the Panorama mode, you can stand in one place, turn slowly, and obtain a photograph of 360° of a scene. If you want to include less than 360°, you can interrupt the scan by pressing the shutter release button.
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Tuesday, June 16, 2026
Roswell: Highway 285 to Berrendo Road - Education and sports
I walk by this school two or three days a week. It's the elementary school for the Berrendo district. There is also a middle school east of Main Street and North of East Pine Lodge Road that I haven't seen.
According to the Roswell City website, Roswell has four high schools, four middle schools and twelve elementary schools. The high schools have options for traditional classes, college bound curricula, or advanced placement. I'll be visiting some of these schools in my explorations (actually, I've already been by Goddard High School to check out their rockets). There are also three Christian schools.
In higher education, there are the New Mexico Military Institute and the Eastern New Mexico University. There is also the Roswell Job Corps Center.
As bad as people talk about New Mexico schools, I have noticed that students and faculty members in these schools seem to enjoy being there. The Roswell schools have more fine art programs than any other schools in the state.
There are far too many sports programs in Roswell, either in schools and out, sponsored by the community and independent. I will be talking about some as I explore the town. For instance I've already seen two golf courses and more than one big sports complexes.
This is the desert. The nearest sizable towns (Ruidoso and Carlsbad) are 75 miles away. People need something to do. And people are out doing things here. I I never get to ignore car or foot traffic when I walk.
Saturday, June 13, 2026
Photography - 1
Although point-and-shoot photography, provided by my smartphones, have served me well in the past, occasionally, I need to have more control and my study of biology has brought that forward, especially here in the desert where the intense light adds an extra factor and need for adjusting exposure.
So I decided to take Professor Marc Levoy's online digital photography course (Digital Photography). And I'm learning quite a lot.
Exposure, the amount of light reaching the photographic element affecting the brightness of the image, is a subtle balance of shutter speed, lens aperture, and ISO which is a measure of the sensors sensitivity to the light.
The trick is that each control involves a different trade off.
For instance, the longer the shutter remains open, the more motion you will catch and the more the subject will blur, which is an effect that you might want occasionally, but not usually.
Tuesday, June 9, 2026
Roswell: Highway 285 to Berrendo Road - Arts and culture
People in other parts of the country do not generally consider Roswell a high culture city and it's certainly not a beacon of culture, but being a college town, it shouldn't be too surprising that there is art and culture here. In fact, the city makes it a point to provide cultural activities for residents' enjoyment, and they tend to be popular
There isn't a lot of high art in North Roswell but there are some attractive pieces like this sculpture....
at the Silva Law Firm.
There are eight museums in Roswell displaying things from aliens to less mysterious space science to modern art. I will be checking those out as I continue exploring the town (A couple of them are closed for repair after last years disastrous floods )
There are also some interesting statues and other monuments in other parts of town.
I also look forward to visiting the visitor center and public library in the center of town
There have been quite a few stellar individuals who have lived and worked in or near Roswell
Wikipedia lists 21 prominent people who lived a significant amount of time in Roswell (in alphabetical order). They are:
Robert O. Anderson (1917-2007) American businessman, art collector, and philanthropist. Born in Chicago and died in Roswell. The Anderson Museum of Contemporary Art is named after him. He is the founder of the Atlantic Richfield Company. In his time he was the largest landowner in the U.S. with over 2000 square miles of property in Texas and New Mexico
Bobby Baldock (1936 - ) United States circuit judge of the United States Court of Appels for the tenth circuit. He was born in Oklahoma
Tom Brookshier (1932-3010) American football player, coach, and sportscaster. Born in Roswell, he died in Pennsylvania. His football career ended with the Philadelphia Eagles with a knee injury. He went on to be a popular sportscaster.
John Chissum (1824-1884) rancher and cattle barron. He owned the Jingle Bob Ranch about five miles west of Roswell.
Louise Holland Coe (1894-1985) first woman elected to New Mexico Senate and first woman to run for the Congress in the U.S. Born in Texas and died in Roswell.
Max Coll (1932- ) 15 term New Mexico Representative.
Ray Crawford (1915-1996) American fighter and test pilot, race car driver and businessman.
John Denver (1943-1997) born Henry John Deutschendorf Jr., although he is definitely remembered as a Coloradoan (who wrote one of the two official state songs: Rocky Mountain High) who lived in Aspen, he was born in Roswell and is remembered fondly.
Pat Garrett (1850-1908) Among other things, the sheriff of Lincoln County, New Mexico who was famous for killing Billy the Kid.
Robert H. Goddard (1882-1945) Although he was born in Massachusetts, he did most of his work inventing liquid fuel rockets around Roswell, New Mexico. His rocket designs led to those that carried people into space and to the moon.
Susan Graham (1960 -) operatic mezzo-soprano. She was born in Roswell, but didn't stay here long. She has encouraged the popularity of French and contemporary American songs
J. J. Hagerman (1838-1909) industrialist and operated mines, railroads, and corporate farms. He moved to the Roswell area in 1892, buying the Chissum Jingle Bob Ranch. He donated part of the land currently occupied by the New Mexico Military Institute. He was born near Port Hope in upper Canada but moved to the western United States due to contracted tuberculosis. But he lived in Europe for the last years of his life and died in Milan, Italy.
James F. Hinkle (1862-1951) Roswell mayor, New Mexico State senator, and New Mexico governor.
Nancy Lopez (1957- ) LPGA tour golfer. Won 48 LPGA tour events, including three major championships. She was born in California but went to Goddard High School in Roswell.
Jody McCrea (1934-2009) Actor. Born in Los Angeles but died in Roswell. He retired from films in 1972 and became a rancher in Roswell.
Gerina Piller (1985- ) LPGA professional golfer. Born in Roswell, she attended college and currently lives in Texas.
Priscilla Presley (1945- ) Business woman and actress. Wife of Elvis Presley. Born in New York, Her father, Paul Beaulieu, was stationed at Roswell Air Force Base during her childhood. During that time she attended Valley View Elementary School.
Clinton Puckett (1926-2002) 6th Sargent Major of the Marine Corps. He serves in World War II, the Vietnam War, and Korea and received the Navy Cross for extreme heroism in Korea. He was born in Waurika, Oklahoma, grew up in Roswell and died in Washington, D.C. His Wikipedia article has a copy of his decoration describing the event for which he was awarded.....movie material.
Clinton Puckett Navy Cross citation
James Riseley (1898-1992) a decorated officer of the United States Marine Corps, he was born in New York and lived the last part of his life in Roswell.
Jason Lawrence Geiger (1974- ) also known professionally as Austin St. John is an actor, popularly the first Red Power Ranger, Jason Kee Scott.
I hate being so brief with these people. They're real people with fascinating lives (like everyone), but this is a blog with some space restrictions (I can study or I can write blogs). Each has their own Wikipedia article and I recommend that you check out the historical people of your area. Also check out local memorials and their back stories. If you move around much, you're going to see statues of boll weevils, and apples, and peaches......and what is Lady Liberty doing in Alabama?!
Monday, June 1, 2026
Cells and extending perception: some tools of biology - 2
Both field work and laboratory exercises involve imaging, especially if there's a blog involved. Fortunately, modern smartphones provide several camera options.
My smartphone is a Motorola Moto g Power with three cameras. There are two back cameras (the ones on the side opposite the screen), and one front camera (the one used for selfies).
My field kit (fits nicely into my backpack)
Life happens across all scales of a biome and imaging has to keep up with the scale
The molecules that make up the basis of life are just regular compounds like salt (sodium chloride) and water extending up to huge molecules like proteins and genetic molecules. They exist at the nanometer scale. A nanometer is a thousandth of a micrometer, which is a thousandth of a millimeter, which is a thousandth of a meter. It's smaller than the wavelength of visible light, so we can't use a light microscope to see it.
Electron wavelengths are on the order of 20 nanometers down to (under acceleration) picometers (a picometer is a thousandth of a nanometer). We can use electrons in electron microscopes to see molecules.
From Electron Microscope, Wikipedia article
But electron microscopes are expensive and absolutely not portable so any image at the nanoscale here will be from public domain images.
I catch up at the micrometer scale.
My smartphone, a Motorola Moto g Power, has three built in cameras. For most of my past photography, point-and-shoot did pretty much what I wanted but biology is requiring a little more ... finesse. So I'm taking a course in photography, a series of lectures by Marc Levoy, professor emeritus of computer science at Stanford University. (Digital Photography ) Early on he recommends avoiding phone cameras but for reasons of expense and portability, I ain't gonna.
Actually, I am very impressed with the advances in phone cameras from my last to my current phone.
There are many (!) camera apps available to optimize the cameras in smartphones. They work some different from professional cameras. To approximate the same control over images, they have to use some advanced algorithms to simulate them.
In addition to the camera app that came with the phone, a fairly no frills point-and-shoot digital camera with options in the settings menu, I selected three other general purpose apps and two for managing exterior cameras like camcorders and a bore scope.
Why collect camera apps? Because they each have their own strengths and weaknesses. Don't feel limited by my selection, but the ones I use are:
OpenCamera. By Mark Harman. A fairly unassuming camera, with a lot under the hood including a choice of metadata to a display as stamps on the photographs.
Proton, by Hinnka. This is a strong simulation of a professional DSLR down to dial selectors. Both it and the next offer extensive control of exposure, color, special effects, and style with in-camera editing of images
ProShot, by Rise Up Games, is also an excellent simulation of a pro DSLR camera I used ProShot for most of the photo micrographs in the first part of this blog (this is part 2).
Microscopy and photomicroscopy operate in the micrometer range, perfectly doable for visible light. Most small organisms, bacteria, protozoa, many medical parasites, molds and yeasts, fall into that range.
The micrometer is such a common unit in biology that it's often just shortened to "micron" and the nanometer is sometimes called a "millimicron" (less so than in the past).
Single cells are usually colorless which makes them hard to see with visible light so stains and other tricks (polarized light, fluorescence, dark field microscopy, etc ) are used to make them visible. Stains are dyes that attach to or dissolve in or react with certain parts of cells. For instance, lipid soluble dyes will preferentially color the lipid membranes of cells while water soluble dyes will go to the watery interiors. The indicators commonly used in analytical chemistry may dye different parts of cells that have different chemical properties differently. For instance, a pH indicator will dye acid and base elements different colors
Even food colors will bring out the nuclei in cells.
The less powerful microscope is more portable and easier to use in the field but is fine for tiny details like grains of sand, small crystals, tiny flowers, small insects and other invertebrates.
The camera apps have functions that can sharpen microscopic images and enhance contrast.
Macrophotography involves close up photographs of detail, and usually operates in the millimeter range. Most smartphones today have at least a standard back camera and a camera with a macro lens. Some have wide field cameras. Mine doesn't but I do have a clip-on wide field kens
On one of my treks into town, I noticed a mossy looking (actually not a moss but a succulent) plant covered spot of the ground. Interested in the tiny white flecks, I switched to my micro camera, got close and took this photograph.
The first exposure I had to the idea of "bellyflowers" was from a documentary long ago by the Moody Institute of Science about researchers in Death Valley. In the desert (like where I now live), it's often a good survival trait to be small and close to the ground, so many desert flowers are produced by ground covers and are tiny
"Standard" photography is also important in biology because the centimeter to decameter range is where we live. I saw this fellow on a trip back from town one day and he stayed long enough for me to get a picture.
The advantage of "regular" photography is that I almost always have my smartphone with me but I only have my photographic paraphernalia if I plan to have it.
I'm also impressed by the stabilization offered by current phone cameras. The trick of waiting until the shutter button has been poked and the camera motion has settled down is good, but my newest phone has OIS, "optical image stabilization". If I twitch in one direction when I press the shitter release, the camera senses it and twitches the camera kens in the opposite direction, canceling the blur
Telephotography carries my photography into the range from here to as far as my eyes can see. Capturing images of skittish or dangerous animals from afar or surveying ecosystems is valuable in ecology and conservation
The banner for this blog was hand stitched but modern digital cameras have a feature called "panorama". You stand in one spot and rotate and your camera will nicely stitch the whole scene together for you.
Now, it's difficult to catch action precisely in a photograph. You can use apps like motion detectors to trigger a camera. Some cameras even come with motion detectors, but there is an easier way ....just make a video and extract what you want.
When reviewing the video above, I spotted a strike that I wanted a photograph of so I cut the following out and cleaned it up some.
The most common admonition I've seen in courses on photography is "take lots of pictures". Much of photography is feeling. Volume gives you a chance to learn the features of your camera and a feeling for composition and, generally, what works
I don't have Professor Levoy's objection to smartphone cameras so, whether you have a film or digital camera or a smartphone, go out and take lots of pictures!














































